karkman / MetagenomeCourse2019Links
Course material for the metagenomics course
☆46Updated 3 years ago
Alternatives and similar repositories for MetagenomeCourse2019
Users that are interested in MetagenomeCourse2019 are comparing it to the libraries listed below
Sorting:
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- ☆85Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- ☆32Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆105Updated 9 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆57Updated last year
- Development version of Easyfig☆102Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆125Updated 3 weeks ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- ☆23Updated 7 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Bioinformatics Tools☆89Updated last month
- gutSMASH☆56Updated last month
- Micro 612 genomics workshop☆38Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago