Alternatives and similar repositories for Amplicon2017

Users that are interested in Amplicon2017 are comparing it to the libraries listed below

• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆48Updated 3 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆121Updated 4 months ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• YongxinLiu / Note
  ☆125Updated 3 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 6 years ago
• taowenmicro / EasyStat
  EasyStat
  ☆17Updated 3 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆172Updated 2 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆143Updated last week
• ChengGaoBerkeley / EPICON.Mycobiome
  ☆13Updated 4 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 weeks ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆81Updated 5 months ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆186Updated 4 months ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 6 years ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆236Updated 2 weeks ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• YongxinLiu / EasyMicrobiome
  ☆113Updated last week
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆16Updated 6 months ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆119Updated last year
• YongxinLiu / MicrobiomeProtocol
  Microbiome Protocol eBook related documents and scripts.
  ☆48Updated 4 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• SegataLab / lefse
  ☆86Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 8 months ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆126Updated last year
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆54Updated 2 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• rogotoh / PMiFish
  ☆12Updated last year
• emblab-westlake / MbioAssy
  ☆14Updated 3 weeks ago