Data and scripts for amplicon pipeline
☆27Mar 10, 2019Updated 7 years ago
Alternatives and similar repositories for Amplicon2017
Users that are interested in Amplicon2017 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Mar 29, 2019Updated 7 years ago
- Metagenome analysis pipeline☆101Jul 26, 2021Updated 5 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆125Oct 12, 2021Updated 4 years ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- ☆14Jul 21, 2026Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆96Sep 1, 2026Updated last week
- ☆26Jun 13, 2022Updated 4 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆306Jul 29, 2023Updated 3 years ago
- 历史文档备份(只包含2019年和2020年)☆205Jul 20, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated last year
- A curated list of R used in ecology and evolution☆13Aug 9, 2021Updated 5 years ago
- Web content for Meren Lab☆12Aug 25, 2026Updated 2 weeks ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- ☆16Jul 14, 2023Updated 3 years ago
- Easy Amplicon data analysis pipeline☆374Apr 20, 2026Updated 4 months ago
- ☆15Jun 24, 2019Updated 7 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An interactive browser for the VDJdb database☆16Aug 28, 2026Updated last week
- Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation☆14Updated this week
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆15May 1, 2023Updated 3 years ago
- R package for Ecological Networks utility functions and metrics☆11Aug 3, 2026Updated last month
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆463Feb 13, 2026Updated 6 months ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ❄️🐻 Climate change and cross-species viral transmission☆13Apr 15, 2022Updated 4 years ago
- How to draw multilayer networks in R.☆14Oct 25, 2020Updated 5 years ago
- Data Visualization with ggplot2☆14Jun 5, 2021Updated 5 years ago
- a greta extension for generalised additive modelling using mgcv☆11Jul 29, 2026Updated last month
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 8 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 4 months ago
- Tao Yan's Plot Toolkit☆13Aug 20, 2019Updated 7 years ago