YeoLab / single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
☆102Updated 8 years ago
Alternatives and similar repositories for single-cell-bioinformatics:
Users that are interested in single-cell-bioinformatics are comparing it to the libraries listed below
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆78Updated 8 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- R package for analyzing single-cell RNA-seq data☆173Updated last year
- Cell types enrichment analysis☆194Updated 9 months ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated 2 years ago
- my notes for scATACseq analysis☆122Updated 11 months ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- R package to access DoRothEA's regulons☆142Updated last year
- Tools for single-cell data processing☆122Updated 9 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ☆116Updated last year
- ☆118Updated 6 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆120Updated last week
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- The package wrapping the book, for deployment via the Bioconductor build system.☆83Updated 4 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year
- ☆129Updated 6 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago