Course material in notebook format for learning about single cell bioinformatics methods
☆101Jun 19, 2016Updated 10 years ago
Alternatives and similar repositories for single-cell-bioinformatics
Users that are interested in single-cell-bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 7 years ago
- Analysis of single cell RNA-seq data course☆682Apr 11, 2022Updated 4 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- scRNAseq analysis notes from Ming Tang☆813Dec 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Dec 7, 2020Updated 5 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆17Mar 4, 2017Updated 9 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆22Jul 13, 2023Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆441Apr 28, 2026Updated 2 months ago
- ☆12Apr 24, 2020Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆94Aug 26, 2020Updated 5 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 8 years ago
- Publication Page for MPAL Paper 2019☆86Jun 25, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆82Nov 7, 2016Updated 9 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,771Jun 23, 2026Updated last week
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- ☆16Jun 11, 2019Updated 7 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 8 months ago
- Batch effects and the effective design of single-cell gene expression studies☆107Jul 23, 2019Updated 6 years ago
- A list of scRNA-seq analysis tools☆802Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,573Dec 11, 2022Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆27Jan 25, 2022Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆231Aug 1, 2022Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆340Updated this week
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated last year
- simple library for dealing with SAM cigar strings☆41Feb 20, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆90Dec 4, 2025Updated 7 months ago
- ☆87Jul 13, 2020Updated 5 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 5 years ago
- ☆28Jul 5, 2020Updated 5 years ago
- Info about NIH-IRP Single Cell Users Group events☆12Nov 21, 2023Updated 2 years ago
- RNAseq analysis notes from Ming Tang☆1,090Nov 15, 2021Updated 4 years ago