YeoLab / single-cell-bioinformaticsLinks
Course material in notebook format for learning about single cell bioinformatics methods
☆100Updated 9 years ago
Alternatives and similar repositories for single-cell-bioinformatics
Users that are interested in single-cell-bioinformatics are comparing it to the libraries listed below
Sorting:
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 3 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆143Updated 7 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- RNA-seq data analysis practical☆62Updated 11 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- ☆118Updated 7 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- A continually expanding collection of cancer genomics notes and data☆112Updated this week
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆119Updated 6 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated 2 years ago
- published papers with a lot of data☆74Updated 9 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Tools for single-cell data processing☆131Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆152Updated last year
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 2 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆195Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago