Course material in notebook format for learning about single cell bioinformatics methods
☆100Jun 19, 2016Updated 10 years ago
Alternatives and similar repositories for single-cell-bioinformatics
Users that are interested in single-cell-bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- Analysis of single cell RNA-seq data course☆686Apr 11, 2022Updated 4 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- scRNAseq analysis notes from Ming Tang☆845Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Publication Page for MPAL Paper 2019☆86Jun 25, 2020Updated 6 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆23Jul 13, 2023Updated 3 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,889Updated this week
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆446Oct 25, 2026Updated last week
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆17Mar 4, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,599Dec 11, 2022Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Batch effects and the effective design of single-cell gene expression studies☆110Jul 23, 2019Updated 7 years ago
- ☆15Aug 25, 2022Updated 4 years ago
- A list of scRNA-seq analysis tools☆826Updated this week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- ☆12Apr 24, 2020Updated 6 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated 2 years ago
- ☆16Jun 11, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆43Oct 15, 2025Updated last year
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆81Nov 7, 2016Updated 9 years ago
- Info about NIH-IRP Single Cell Users Group events☆12Nov 21, 2023Updated 2 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆344Updated this week
- Single RNA-seq data analysis with R (Finland, May, 2019)☆233Aug 1, 2022Updated 4 years ago
- RNA editing tests☆17Sep 24, 2020Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆24Feb 14, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆31Dec 23, 2019Updated 6 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆106Nov 22, 2022Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 10 months ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 9 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆33Jun 24, 2024Updated 2 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,607Updated this week