YeoLab / single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
☆101Updated 8 years ago
Alternatives and similar repositories for single-cell-bioinformatics:
Users that are interested in single-cell-bioinformatics are comparing it to the libraries listed below
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆165Updated 7 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- R package for analyzing single-cell RNA-seq data☆173Updated 11 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- my notes for scATACseq analysis☆120Updated 9 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆78Updated 8 years ago
- ☆116Updated last year
- ☆118Updated 6 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- Introduction to bulk RNA-seq☆102Updated last week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Cell types enrichment analysis☆191Updated 8 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆102Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 8 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- ☆140Updated 6 years ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- Interactively analyze single cell genomic data☆181Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated 3 weeks ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 4 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆122Updated 3 years ago
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆126Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆140Updated 8 months ago