jdblischak / singleCellSeq
Batch effects and the effective design of single-cell gene expression studies
☆100Updated 5 years ago
Alternatives and similar repositories for singleCellSeq:
Users that are interested in singleCellSeq are comparing it to the libraries listed below
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- R package for analyzing single-cell RNA-seq data☆173Updated 11 months ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆78Updated 8 years ago
- ☆118Updated 6 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- Clone of the Bioconductor repository for the scater package.☆95Updated this week
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆101Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆101Updated 8 years ago
- chromatin Variability Across Regions (of the genome!)☆165Updated 7 months ago
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆91Updated 4 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- R data package for annotating/converting Gene IDs☆163Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Interactively analyze single cell genomic data☆181Updated this week
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- RNA velocity estimation in R☆184Updated last year
- A factor analysis package☆98Updated 12 years ago
- Clone of the Bioconductor repository for the SingleR package.☆182Updated last month
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- ☆53Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- ☆14Updated 4 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 2 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated last year
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆166Updated last year