Batch effects and the effective design of single-cell gene expression studies
☆105Jul 23, 2019Updated 6 years ago
Alternatives and similar repositories for singleCellSeq
Users that are interested in singleCellSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Oct 17, 2018Updated 7 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Dynamic statistical comparisons in R☆17Jun 29, 2018Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- Scripts to recreate figures from the SC3 paper☆41Mar 1, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆108Nov 22, 2022Updated 3 years ago
- 软件方面的包 (包括各种芯片数据处理,NGS数据处理,差异分析等等!)☆14Apr 23, 2016Updated 9 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 9 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,683Mar 9, 2026Updated 2 weeks ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- From IDAT to beta.☆25Jul 13, 2018Updated 7 years ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- ☆118Aug 17, 2018Updated 7 years ago
- Single-CELL rna-seq analysis software☆39Oct 25, 2017Updated 8 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Git使用手册☆17Mar 10, 2019Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago
- Analysis pipeline for ATAC-seq Data☆62Sep 2, 2021Updated 4 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆269May 5, 2023Updated 2 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆101Jun 19, 2016Updated 9 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,559Dec 11, 2022Updated 3 years ago