Alternatives and similar repositories for NGS_Workshop_Advanced_Bioinformatics

Users that are interested in NGS_Workshop_Advanced_Bioinformatics are comparing it to the libraries listed below

• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• CBC-UCONN / RNA-seq-with-reference-genome-and-annotation
  ☆23Updated 10 months ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated last year
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated this week
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• dzhakparov / GeneSelectR
  ☆23Updated last year
• ding-lab / VirusScan
  VirusScan Pipeline
  ☆11Updated 10 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• nasqar / NASQAR
  NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
  ☆32Updated 5 years ago
• bpucker / RNA-Seq_analysis
  scripts for RNA-Seq analysis
  ☆28Updated 3 years ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆25Updated 5 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 10 months ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• jfnavarro / hla_pipeline
  DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
  ☆11Updated 4 years ago
• gencorefacility / r-notebooks
  Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
  ☆20Updated 6 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated last month
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 8 months ago
• igbb-popescu-lab / NetSeekR
  A networks analysis pipeline for RNASeq time series data
  ☆14Updated 5 years ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• adigorla / xgap
  xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …
  ☆11Updated 5 years ago
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated this week
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆15Updated 6 months ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated last week
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated this week