sysbiomelab / MIGRENELinks
the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling
☆11Updated last year
Alternatives and similar repositories for MIGRENE
Users that are interested in MIGRENE are comparing it to the libraries listed below
Sorting:
- ☆17Updated 3 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 3 weeks ago
- ☆32Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- ☆45Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 years ago
- ☆80Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- An algorithm for clustering metagenomic sequences.☆39Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- ☆31Updated 11 months ago
- Build a map of genes present across a set of microbial genomes☆18Updated last week
- ☆41Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆43Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆50Updated 11 months ago
- ☆30Updated last month
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 months ago
- Pipelines used in the lab.☆14Updated 8 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆94Updated 6 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- StrainFinder☆29Updated 7 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- A package to annotate protein sequences☆60Updated 9 months ago