sysbiomelab / MIGRENELinks
the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling
☆11Updated last year
Alternatives and similar repositories for MIGRENE
Users that are interested in MIGRENE are comparing it to the libraries listed below
Sorting:
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- Pipelines used in the lab.☆12Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- ☆38Updated 2 weeks ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated last month
- KEGG Module Evaluation Tool☆29Updated last year
- ☆32Updated 3 months ago
- Prophage Activity Estimator☆26Updated last year
- ☆45Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆76Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 2 months ago
- ☆30Updated 2 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆44Updated 2 months ago
- IslandPath standalone software☆32Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆23Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- ☆71Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- ☆17Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- ☆53Updated last year