sysbiomelab / MIGRENELinks
the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling
☆11Updated last year
Alternatives and similar repositories for MIGRENE
Users that are interested in MIGRENE are comparing it to the libraries listed below
Sorting:
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated 2 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- ☆17Updated 3 years ago
- ☆39Updated 2 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 8 months ago
- ☆32Updated 5 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 5 months ago
- ☆56Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆36Updated 5 months ago
- An algorithm for clustering metagenomic sequences.☆37Updated 4 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- ☆73Updated last week
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆35Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆70Updated 3 months ago
- ☆30Updated 7 months ago
- Pipelines used in the lab.☆13Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Prediction of prophages from bacterial genomes☆79Updated last month
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆32Updated last week
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆41Updated last year