Scripts to analyse metagenome-wide metabolic models
☆13Aug 9, 2023Updated 3 years ago
Alternatives and similar repositories for MetaModels
Users that are interested in MetaModels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- Workflow for functional annotation of a set of bacterial genomes☆11Nov 8, 2025Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated 2 months ago
- IMSA+A is an extension of Arron-IMSA program for metagenomic taxonomic classificiation using RNAseq (rRNA depleted) reads.☆11Dec 4, 2017Updated 8 years ago
- ☆21Apr 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population genomics from metagenomes☆13Updated this week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆49Updated this week
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 11 months ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆15Jun 29, 2026Updated 4 months ago
- Microbiome classification pipeline☆67Sep 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Dec 15, 2020Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- metabolic heatmap☆22May 12, 2019Updated 7 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆48Aug 5, 2026Updated 3 months ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 9 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 11 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Jan 7, 2026Updated 10 months ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 7 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated last year
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆275May 13, 2026Updated 5 months ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 11 months ago
- ☆10Sep 2, 2026Updated 2 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 10 months ago
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆34Mar 5, 2019Updated 7 years ago
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆21Dec 21, 2025Updated 10 months ago
- Quorum sensing gene database for archaea and bacteria☆10Aug 31, 2023Updated 3 years ago
- IPHOMED☆12Mar 30, 2026Updated 7 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- ☆15Jun 23, 2026Updated 4 months ago
Are these results useful?