biobakery / anadama2Links
AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).
☆12Updated 3 months ago
Alternatives and similar repositories for anadama2
Users that are interested in anadama2 are comparing it to the libraries listed below
Sorting:
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- A shiny package for microbiome functional enrichment analysis☆38Updated this week
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- gutSMASH☆55Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 5 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- ☆40Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆32Updated 11 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆59Updated 6 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25Updated 6 years ago
- raw data from tax-credit project☆14Updated 6 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago