biobakery / anadama2Links
AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).
☆12Updated last month
Alternatives and similar repositories for anadama2
Users that are interested in anadama2 are comparing it to the libraries listed below
Sorting:
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆40Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Some useful python scripts for biologists☆32Updated 11 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- ☆32Updated 9 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- gutSMASH☆55Updated 2 weeks ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 6 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- ☆23Updated 7 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆78Updated last week