ThieleLab / CodeBase
Code depository for papers
☆22Updated 3 months ago
Alternatives and similar repositories for CodeBase:
Users that are interested in CodeBase are comparing it to the libraries listed below
- ☆38Updated 3 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆79Updated 9 months ago
- Repository of tutorials for The COBRA Toolbox☆21Updated last week
- A package to annotate protein sequences☆55Updated 3 weeks ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 3 months ago
- ☆29Updated 6 months ago
- ☆65Updated 5 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆29Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Similarity networks of biosynthetic gene clusters☆102Updated last week
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆20Updated 4 years ago
- gutSMASH☆53Updated 3 months ago
- CLI tool to annotate genes with KOfam☆77Updated last year
- Portable WDL workflows for CZ ID production pipelines☆41Updated 3 weeks ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 6 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆17Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- ☆26Updated 4 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- ☆25Updated last year
- Database of virus RdRP barcode sequences☆15Updated 8 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- ☆11Updated 5 years ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 2 years ago
- MGnify genome analysis pipeline☆105Updated this week
- Simple bacterial assembly and annotation pipeline☆68Updated this week