ThieleLab / CodeBase

Related projects: ⓘ

• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆71Updated 3 months ago
• SBRG / precise-db
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• qLSLab / GPRuler
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  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
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  A package to annotate protein sequences
  ☆53Updated 2 months ago
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  ☆12Updated 5 years ago
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  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆24Updated 5 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• mckennalab / Circuitseq
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  ☆30Updated 11 months ago
• raeslab / omixer-rpm
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  ☆25Updated 5 years ago
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  Computation of Microbial Ecosystems in Time and Space
  ☆19Updated this week
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 11 months ago
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  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆18Updated last year
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  ☆34Updated 2 months ago
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  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
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  ☆21Updated 9 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
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  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆16Updated last year
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  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
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  Simple phylogenetic tree visualization python package for phylogenetic analysis
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  Find common blocks and differences between DNA sequences
  ☆38Updated 2 years ago
• lichen-lab / MDeep
  ☆14Updated 4 years ago