Code depository for papers
☆27Oct 22, 2025Updated 10 months ago
Alternatives and similar repositories for CodeBase
Users that are interested in CodeBase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 4 years ago
- ☆17Feb 6, 2020Updated 6 years ago
- ☆21Dec 15, 2020Updated 5 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expr…☆35Jan 27, 2026Updated 7 months ago
- ☆21Mar 15, 2023Updated 3 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- gutSMASH☆60Oct 3, 2025Updated 10 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- ☆17Updated this week
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- ☆16Aug 10, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆25Updated this week
- Public repository for cFMD - curatedFoodMetagenomicData☆38Jun 18, 2026Updated 2 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- ☆15Sep 15, 2022Updated 3 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- ☆19Feb 3, 2023Updated 3 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- ☆43Feb 14, 2021Updated 5 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- programmable access to GM repo☆31May 16, 2023Updated 3 years ago
- ☆18Updated this week
- ☆27Dec 20, 2023Updated 2 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The project data analysis code☆22Aug 6, 2024Updated 2 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Updated this week
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Deep learning-based language model for glycan sequences☆18Jan 17, 2020Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago