2025 RAD microbes boot camp
☆15Apr 30, 2025Updated 10 months ago
Alternatives and similar repositories for radmicrobes
Users that are interested in radmicrobes are comparing it to the libraries listed below
Sorting:
- ☆10Nov 24, 2025Updated 3 months ago
- ☆19Dec 15, 2020Updated 5 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 2 years ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Updated this week
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Updated this week
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated 9 months ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆18Feb 19, 2026Updated last week
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated last month
- ☆17Jan 29, 2026Updated last month
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- ☆17Nov 19, 2024Updated last year
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 4 months ago
- ☆11Jul 3, 2022Updated 3 years ago
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆24Feb 16, 2026Updated 2 weeks ago
- Bacterial surveillance pipeline.☆27Dec 30, 2025Updated 2 months ago
- ☆23May 16, 2020Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 2 years ago
- ☆20Apr 24, 2025Updated 10 months ago
- R package for sparse canonical correlation analysis with mixed data types (continuous, binary, zero-truncated)☆22Nov 17, 2025Updated 3 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Feb 14, 2026Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Jun 25, 2023Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- ☆81Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Feb 19, 2026Updated last week
- Python Toolkit for using containerized programs in either Singularity or Docker☆29Mar 19, 2024Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆34Updated this week
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Aug 22, 2023Updated 2 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago