Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
☆50Nov 4, 2025Updated 5 months ago
Alternatives and similar repositories for EasIFA
Users that are interested in EasIFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein function prediction using protein structures and deep graph neural networks.☆21Jan 24, 2025Updated last year
- ☆14Feb 27, 2024Updated 2 years ago
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- MPEK is a universal tool for predicting enzyme turnover number (kcat) and Michaelis-Menten constant (Km) for all types of enzymes. BTW, a…☆28Aug 21, 2024Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆307Apr 6, 2025Updated last year
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 2 months ago
- RXN for biochemical reactions☆74Oct 18, 2022Updated 3 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆76Feb 24, 2025Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆85Mar 24, 2026Updated 3 weeks ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)☆220Mar 24, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆17Dec 9, 2024Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆309Mar 6, 2026Updated last month
- ☆50Aug 13, 2025Updated 8 months ago
- ☆26Oct 8, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- ☆25Jan 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 10 months ago
- Topological transformer for protein-ligand complex interaction prediction.☆46Nov 25, 2025Updated 4 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆58Jan 28, 2026Updated 2 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆586Mar 8, 2026Updated last month
- ☆68Apr 8, 2025Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆44Apr 11, 2024Updated 2 years ago
- ☆24May 19, 2025Updated 10 months ago
- The first 100B protein language model from biomap☆23Mar 17, 2025Updated last year
- Python interface to cd-hit☆10Feb 26, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Improved antibody structure-based design using inverse folding☆159Dec 9, 2025Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆74Jul 2, 2025Updated 9 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆58Dec 16, 2025Updated 4 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆34Mar 30, 2026Updated 2 weeks ago
- ☆41Jul 7, 2024Updated last year
- ☆84Feb 11, 2026Updated 2 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆47Nov 4, 2025Updated 5 months ago