Source code and examples for AlphaFold Unmasked
☆76Nov 25, 2025Updated 3 months ago
Alternatives and similar repositories for AF_unmasked
Users that are interested in AF_unmasked are comparing it to the libraries listed below
Sorting:
- ☆91Sep 25, 2024Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Dec 2, 2025Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆63Aug 26, 2025Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- ☆21Oct 26, 2024Updated last year
- Official Implementation of IgGM☆179Nov 30, 2025Updated 3 months ago
- Official repository of EnzymeFlow☆98Dec 7, 2024Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆79Sep 11, 2025Updated 5 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆102Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 4 months ago
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- Weighted Ensemble Data Analysis and Plotting☆26Dec 11, 2025Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆253Jan 31, 2026Updated last month
- AlphaFold-initiated replica exchange protein docking☆90Jun 5, 2025Updated 8 months ago
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆73Mar 27, 2025Updated 11 months ago
- ☆18Mar 13, 2024Updated last year
- bioinformatics tools running on modal☆140Feb 18, 2026Updated 2 weeks ago
- ☆95Oct 14, 2025Updated 4 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- Toolkit for alphafold3 input and output files☆97Updated this week
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- User friendly and accurate binder design pipeline☆1,023Feb 5, 2026Updated last month
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- Free Parametrization for Small Molecules☆50Feb 18, 2026Updated 2 weeks ago
- Resources for the BioML Challenge 2024: Bits to Binders☆18Aug 24, 2024Updated last year
- ☆74Feb 13, 2026Updated 2 weeks ago
- Code for ColabDock paper☆151May 1, 2025Updated 10 months ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆168Sep 8, 2024Updated last year
- ☆48Mar 26, 2025Updated 11 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Jun 9, 2025Updated 8 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- ☆70Feb 13, 2026Updated 2 weeks ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆61Jan 30, 2026Updated last month
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year