zaixizhang / PocketGenLinks
PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
☆182Updated last month
Alternatives and similar repositories for PocketGen
Users that are interested in PocketGen are comparing it to the libraries listed below
Sorting:
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆171Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆198Updated 3 months ago
- Protein-ligand structure prediction☆215Updated 10 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆246Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆120Updated last week
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆158Updated 2 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆156Updated 3 months ago
- ☆112Updated last month
- An awesome & curated list of docking papers☆111Updated 2 months ago
- ☆187Updated 8 months ago
- Masif seed paper repository☆154Updated last year
- ☆128Updated 7 months ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆100Updated last year
- ☆126Updated last year
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆119Updated this week
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆122Updated 6 months ago
- Diffusion model based protein-ligand flexible docking method☆105Updated 7 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆130Updated 2 months ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆223Updated last month
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆187Updated 2 months ago
- ☆94Updated 7 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆293Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆165Updated last week
- Official repository of EnzymeFlow☆92Updated 5 months ago
- open source code for Tencent tFold☆100Updated 2 months ago
- ☆127Updated 7 months ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Generative Language Modeling for Antibody Design☆149Updated 7 months ago
- In silico directed evolution of peptide binders with AlphaFold☆180Updated 3 weeks ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆108Updated 3 months ago