Alternatives and similar repositories for EnzymeCAGE

Users that are interested in EnzymeCAGE are comparing it to the libraries listed below

• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆106Updated 2 months ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆98Updated 6 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆98Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆61Updated 2 years ago
• zhengkangjie / ESM-AA
  ☆78Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆125Updated 11 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆108Updated 2 weeks ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated 2 years ago
• ai4protein / Pro-Prime
  ☆76Updated 5 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆116Updated 3 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 3 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• levinthal / Pallatom
  ☆133Updated 8 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 11 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆122Updated this week
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆42Updated 8 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆61Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 8 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆85Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆40Updated last year
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆172Updated last week
• tencent-ailab / Interformer
  ☆114Updated 6 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆80Updated 2 months ago
• wengong-jin / DSMBind
  ☆96Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆179Updated 2 months ago
• pengxingang / PocketXMol
  Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.
  ☆109Updated 2 weeks ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆114Updated 3 months ago