This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
☆16Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for analysis_of_microbiome_community_data_in_r
Users that are interested in analysis_of_microbiome_community_data_in_r are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 16S rRNA Sequencing Data from the Human Microbiome Project☆11May 14, 2026Updated 5 months ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 11 months ago
- ☆15Jul 10, 2018Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Code for riskmapr apps for invasive weed risk mapping☆10Jul 27, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Oct 17, 2017Updated 9 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- A minimal example of building and deploying a blogdown-based website via Travis CI☆14Nov 14, 2019Updated 6 years ago
- Using R to scrape the FAO EcoCrop database☆12Jul 24, 2024Updated 2 years ago
- Microbiome research☆22May 24, 2022Updated 4 years ago
- Visualization of the Ordinary Least Squares estimation of slope for a simple linear model☆14Jun 8, 2018Updated 8 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated last month
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.☆39Updated this week
- An interactive radial tree for functional hierarchies and omics data visualization☆25Mar 27, 2026Updated 6 months ago
- R package for Cardiovascular Risk Dataset and Data generation script☆14Feb 1, 2019Updated 7 years ago
- protocols for bioinformatics data analysis☆10Sep 22, 2020Updated 6 years ago
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant path…☆23Aug 8, 2024Updated 2 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated last year
- ☆12Oct 10, 2023Updated 3 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- ☆13Mar 17, 2019Updated 7 years ago
- supplementary tables and files☆11Oct 13, 2023Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 4 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 4 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆27Aug 31, 2022Updated 4 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jun 15, 2017Updated 9 years ago
- ☆22Aug 18, 2026Updated last month
- Example of using Github Actions to deploy bookdown on Netlify☆20Nov 25, 2021Updated 4 years ago
- Transfer Learning-enabled context-aware microbial source tracking☆16Oct 4, 2022Updated 4 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago