grunwaldlab / analysis_of_microbiome_community_data_in_rLinks
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
☆16Updated 2 years ago
Alternatives and similar repositories for analysis_of_microbiome_community_data_in_r
Users that are interested in analysis_of_microbiome_community_data_in_r are comparing it to the libraries listed below
Sorting:
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 5 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 7 years ago
- ☆20Updated 2 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated 4 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated last year
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- fastqcr: Quality Control of Sequencing Data☆76Updated 2 years ago
- STAMPS 2018 course☆15Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Updated 10 months ago
- Metagenomics calibration R package☆20Updated 3 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Updated 4 months ago
- An Amazing Shiny App☆17Updated 4 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last week
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 3 months ago
- ☆43Updated 8 years ago
- Genomics Workshop Overview☆47Updated 2 weeks ago
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- A model-based visualization method for microbiome data☆16Updated 2 months ago
- ☆19Updated 2 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆21Updated last week
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- Informatic Sequence Classification Trees☆15Updated 7 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- ☆19Updated last week
- Analysis of Phylogenetics and Evolution☆73Updated this week
- Species richness with high diversity☆68Updated 5 months ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 10 years ago
- a take on ordination plots using ggplot2☆65Updated last year