grunwaldlab / analysis_of_microbiome_community_data_in_rView external linksLinks
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
☆16Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for analysis_of_microbiome_community_data_in_r
Users that are interested in analysis_of_microbiome_community_data_in_r are comparing it to the libraries listed below
Sorting:
- ☆15Jul 10, 2018Updated 7 years ago
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 3 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 3 months ago
- Code for riskmapr apps for invasive weed risk mapping☆10Jan 6, 2025Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Using R to scrape the FAO EcoCrop database☆11Jul 24, 2024Updated last year
- protocols for bioinformatics data analysis☆10Sep 22, 2020Updated 5 years ago
- R package for Cardiovascular Risk Dataset and Data generation script☆14Feb 1, 2019Updated 7 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆35Jul 15, 2019Updated 6 years ago
- ☆12Oct 17, 2017Updated 8 years ago
- Visualization of the Ordinary Least Squares estimation of slope for a simple linear model☆14Jun 8, 2018Updated 7 years ago
- A minimal example of building and deploying a blogdown-based website via Travis CI☆14Nov 14, 2019Updated 6 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated 5 months ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant path…☆23Aug 8, 2024Updated last year
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 6 years ago
- Slides for my talk, "The use of colour in graphics"☆20Jun 29, 2020Updated 5 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Aug 10, 2025Updated 6 months ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Aug 31, 2022Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- An interactive radial tree for functional hierarchies and omics data visualization☆26Nov 22, 2022Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- CRAN Task View: Agricultural Science☆32Feb 3, 2026Updated last week
- An R package for conducting co-localization analysis. Edit☆25Jan 4, 2020Updated 6 years ago
- A comprehensive pipeline for short read metagenomic data☆24Aug 25, 2020Updated 5 years ago
- BRowse Over Longitudinal Data Graphically and Analytically in R☆113Jul 29, 2025Updated 6 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- Material for the Python for R Users workshop☆71Dec 12, 2018Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆78Dec 4, 2023Updated 2 years ago
- ☆10Jan 26, 2026Updated 2 weeks ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆28May 1, 2020Updated 5 years ago
- Nord for RStudio☆26Apr 4, 2025Updated 10 months ago