nuin / beginning-python-for-bioinformaticsLinks
repository for the code featured in the blog
☆22Updated 16 years ago
Alternatives and similar repositories for beginning-python-for-bioinformatics
Users that are interested in beginning-python-for-bioinformatics are comparing it to the libraries listed below
Sorting:
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 5 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- The MG-RAST pipeline☆23Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Updated 9 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 8 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- ☆35Updated 9 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- ☆41Updated 7 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Bring Your Own Bioinformatics☆27Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Validate FastQ Files☆36Updated 6 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago