Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
☆59Jun 4, 2025Updated 10 months ago
Alternatives and similar repositories for Groningen-Microbiome
Users that are interested in Groningen-Microbiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome research☆21May 24, 2022Updated 3 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- ☆13Nov 5, 2023Updated 2 years ago
- ☆20Mar 29, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- vaginal microbiota☆13Jan 21, 2025Updated last year
- ☆32Jun 12, 2023Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- bioBakery tools for meta'omic profiling☆312Jun 3, 2025Updated 10 months ago
- IPHOMED☆12Mar 30, 2026Updated 2 weeks ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Apr 12, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Interpretation and visualization of microbiome charts☆543Jul 22, 2025Updated 8 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Jan 24, 2024Updated 2 years ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Curated Metagenomic Data of the Human Microbiome☆151Apr 9, 2026Updated last week
- ☆12Oct 3, 2023Updated 2 years ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 2 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Sep 28, 2022Updated 3 years ago
- The R for Mass Spectrometry meta-package☆18Apr 5, 2026Updated 2 weeks ago
- This repository contains the R code used analyse the eICU and MIMIC-III databases for the Sarkar et al paper "Performance of intensive ca…☆10Nov 27, 2020Updated 5 years ago
- ☆92Sep 3, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Source code for the crAssphage project☆51Nov 11, 2025Updated 5 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆126Mar 30, 2026Updated 2 weeks ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated 2 months ago
- ☆40Dec 16, 2023Updated 2 years ago
- MGnify genome analysis pipeline☆110Updated this week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Killer tools/packages/libraries/websits/...☆21Apr 8, 2026Updated last week
- ☆47Feb 17, 2020Updated 6 years ago
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆459Feb 13, 2026Updated 2 months ago
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Feb 10, 2026Updated 2 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago