aghozlane / masqueLinks
Metagenomic AnalySis with QUantitative pipEline
☆12Updated 6 years ago
Alternatives and similar repositories for masque
Users that are interested in masque are comparing it to the libraries listed below
Sorting:
- A set of R scripts for the analysis of microbial profiles☆41Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- Speedy versions of phyloseq functions☆48Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 9 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- ☆23Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Working with the outputs of sourmash in R☆28Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆38Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 8 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 6 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago
- ☆13Updated 6 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago