Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
☆21Dec 30, 2019Updated 6 years ago
Alternatives and similar repositories for microbiome_plvm
Users that are interested in microbiome_plvm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 5 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Sep 15, 2024Updated last year
- ☆14Dec 12, 2017Updated 8 years ago
- ☆18May 4, 2023Updated 3 years ago
- ☆12May 11, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- A tutorial for pathway visualization using tidyverse, igraph, and ggraph☆61Oct 26, 2024Updated last year
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43May 4, 2026Updated 3 weeks ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- StaG Metagenomic Workflow Collaboration☆28Aug 20, 2024Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- SourceTracker2☆88Jul 10, 2024Updated last year
- ☆81Dec 4, 2023Updated 2 years ago
- 微生信生物☆24Mar 17, 2025Updated last year
- Microbiome research☆21May 24, 2022Updated 4 years ago
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequen…☆12Sep 20, 2022Updated 3 years ago
- R package - Generic Reproducible Parallel Backend for foreach☆21Jan 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river …☆10Jul 9, 2025Updated 10 months ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Woltka: a versatile meta'omic data classifier☆79Sep 8, 2025Updated 8 months ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated 3 weeks ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Dec 19, 2023Updated 2 years ago
- ☆12Oct 3, 2023Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Bioinformatics learning (for high performance computing, big data, and machine learning)☆19Jun 8, 2017Updated 8 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 3 years ago
- Simplex space operations for compositional data implemented in Python.☆13Feb 17, 2022Updated 4 years ago
- Coupled model of plant nitrogen demand and rhizosphere carbon allocation (FUN) and soil SOM cycling (CORPSE)☆10May 24, 2017Updated 9 years ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 6 months ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆12Aug 19, 2021Updated 4 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago