nsgrantham / mimixLinks
MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments
☆11Updated 5 years ago
Alternatives and similar repositories for mimix
Users that are interested in mimix are comparing it to the libraries listed below
Sorting:
- Phylogenetic Isometric Log Ratio☆19Updated last year
- Multinomial Logistic-Normal Models (really fast)☆20Updated 8 months ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆28Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 6 months ago
- diversity estimation under ecological networks☆83Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- microbiome data simulation package☆22Updated last month
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last week
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated 2 years ago
- ☆57Updated last week
- Miscellaneous functions for metagenomic analysis.☆51Updated last week
- Simple R utilities for working with HMMER☆19Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 weeks ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Updated 5 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆89Updated last month
- Python package simulating artificial selection on microbial communities☆14Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- selbal: selection of balances for microbial signatures☆32Updated 8 months ago
- compositional data analysis toolbox☆60Updated 2 years ago
- ☆20Updated 5 years ago