nsgrantham / mimixLinks
MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments
☆11Updated 5 years ago
Alternatives and similar repositories for mimix
Users that are interested in mimix are comparing it to the libraries listed below
Sorting:
- Phylogenetic Isometric Log Ratio☆19Updated 11 months ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- ☆28Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- diversity estimation under ecological networks☆83Updated 2 months ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated 7 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 6 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆88Updated last year
- Simple R utilities for working with HMMER☆20Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…