nsgrantham / mimix
MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments
☆11Updated 4 years ago
Related projects: ⓘ
- Phylogenetic Isometric Log Ratio☆19Updated last year
- [OFFICIAL] [CoDA] An R package to visualize balances of compositional data without dendrograms☆8Updated 3 years ago
- ☆26Updated 6 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆26Updated 8 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆20Updated 2 years ago
- Speedy versions of phyloseq functions☆45Updated 5 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Simple R utilities for working with HMMER☆18Updated last year
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated 9 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 9 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆25Updated 5 years ago
- ☆21Updated 4 years ago
- ☆46Updated 2 weeks ago
- Plot microbiome time series in parallel☆23Updated 10 months ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Implementation of CoNet in R☆14Updated 4 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated 3 months ago
- functions for analyzing phyloseq data☆26Updated last month
- Functions to manipulate and visualize microbial community data☆11Updated last year
- R We There Yet?☆30Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 4 months ago
- selbal: selection of balances for microbial signatures☆32Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆33Updated 5 months ago
- A microbiome analysis toolkit for R☆18Updated last year