amromics / amromicsView external linksLinks
Antimicrobial Resistance Analysis
☆10Jun 11, 2024Updated last year
Alternatives and similar repositories for amromics
Users that are interested in amromics are comparing it to the libraries listed below
Sorting:
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Jan 30, 2025Updated last year
- ☆10May 14, 2025Updated 8 months ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- whole genome MLST analysis☆51Jun 13, 2025Updated 8 months ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Jun 14, 2025Updated 7 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆16Jul 24, 2022Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- A simple pipeline for bacterial assembly and quality control☆16Jan 30, 2026Updated 2 weeks ago
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated last month
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Aug 5, 2024Updated last year
- ☆18Apr 6, 2022Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Dec 5, 2023Updated 2 years ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆22Dec 10, 2024Updated last year
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆30Feb 2, 2026Updated last week
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆20Apr 18, 2022Updated 3 years ago
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated 8 months ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 3 years ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last week