Alternatives and similar repositories for pCMF

Users that are interested in pCMF are comparing it to the libraries listed below

• bioFAM / slalom
  ☆29Updated 3 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆61Updated 3 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆74Updated 3 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆53Updated 5 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• Tchanders / network_inference_tutorials
  ☆32Updated 6 years ago
• Albluca / ElPiGraph.R
  An R package to construct Elastic Principal Graphs
  ☆24Updated 6 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆91Updated 5 years ago
• soedinglab / prosstt
  PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
  ☆26Updated 2 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 5 years ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆46Updated 6 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 2 months ago
• YosefLab / scone
  ☆55Updated 11 months ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 4 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆18Updated 4 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• greenelab / ccc
  ☆23Updated last year
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆17Updated 6 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆107Updated 2 years ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆16Updated 4 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 4 months ago
• kieranrcampbell / clonealign
  Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
  ☆36Updated 5 years ago