devCellPy-Team / devCellPyLinks
devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
☆28Updated last year
Alternatives and similar repositories for devCellPy
Users that are interested in devCellPy are comparing it to the libraries listed below
Sorting:
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- ☆22Updated 3 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆51Updated 11 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Scripts for using scanpy☆38Updated 2 months ago
- Cellsnake tool main repo☆36Updated last year
- Transcription Factor Enrichment Analysis☆36Updated last month
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 7 months ago
- ☆48Updated this week
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Materials and scripts for building cell type encyclopedia table☆20Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated last month
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 4 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- BAGEL software☆28Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago