TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
☆27Oct 18, 2022Updated 3 years ago
Alternatives and similar repositories for TCRconv
Users that are interested in TCRconv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- ☆17Aug 8, 2025Updated 9 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 6 years ago
- ☆50Mar 30, 2026Updated last month
- ☆14Feb 17, 2022Updated 4 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆22Oct 4, 2022Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆240Feb 12, 2026Updated 3 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆65Nov 18, 2025Updated 6 months ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Sep 7, 2023Updated 2 years ago
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated 9 months ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆14Oct 8, 2024Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆92Apr 12, 2024Updated 2 years ago
- An accurate and efficient HLA imputation method.☆26Mar 16, 2023Updated 3 years ago
- GWAS genetics Fine-mapping method☆18May 17, 2024Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆52Aug 9, 2025Updated 9 months ago
- Foundation model-driven lab☆31Mar 25, 2026Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆159Aug 20, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- The code for UniPMT☆19Mar 16, 2025Updated last year
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆25Apr 23, 2024Updated 2 years ago
- ☆26Dec 18, 2024Updated last year
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 8 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆24Feb 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Oct 2, 2024Updated last year
- ☆19Apr 20, 2025Updated last year
- Reading great papers in the history of artificial intelligence and machine learning☆10Oct 26, 2022Updated 3 years ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- T/B cell receptor sequencing analysis notes☆277Dec 1, 2024Updated last year
- ☆17Updated this week