dpryan79 / libBigWig
A C library for handling bigWig files
☆79Updated 3 months ago
Alternatives and similar repositories for libBigWig:
Users that are interested in libBigWig are comparing it to the libraries listed below
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- BigWig and BAM utilities☆96Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- ☆120Updated 5 months ago
- Reference genome resource manager☆76Updated last year
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 2 weeks ago
- Structural Variant Index☆72Updated 4 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated last month
- Assembly Based ReAligner☆73Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- ☆82Updated 6 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆106Updated 10 months ago
- A complete diploid human genome☆117Updated 3 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆67Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago