dpryan79 / libBigWigLinks
A C library for handling bigWig files
☆79Updated 4 months ago
Alternatives and similar repositories for libBigWig
Users that are interested in libBigWig are comparing it to the libraries listed below
Sorting:
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated this week
- BigWig and BAM utilities☆96Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- ☆82Updated 6 years ago
- Reference genome resource manager☆76Updated last year
- ABRA2☆92Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 2 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- ☆120Updated 6 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 6 months ago
- ☆94Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last month
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- FusionInspector code☆57Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 9 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 7 months ago