Alternatives and similar repositories for ROBIN

Users that are interested in ROBIN are comparing it to the libraries listed below

• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated 3 weeks ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆34Updated last week
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated this week
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆37Updated 2 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆37Updated this week
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆32Updated last month
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated 2 months ago
• UCSC-nanopore-cgl / margin
  ☆31Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 11 months ago
• epi2me-labs / wf-alignment
  ☆28Updated 3 weeks ago
• epi2me-labs / wf-amplicon
  ☆35Updated last month
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• PacificBiosciences / pbAA
  ☆24Updated 3 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆18Updated 3 weeks ago
• mcfrith / dnarrange
  ☆16Updated 4 months ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆16Updated 7 years ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆28Updated this week
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year
• pachterlab / fastQpick
  ☆26Updated 4 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated last month
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆21Updated last year
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆102Updated this week
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 2 months ago
• ialbert / genescape-central
  Gene Ontology subgraph visualizations
  ☆20Updated 9 months ago