Alternatives and similar repositories for ROBIN

Users that are interested in ROBIN are comparing it to the libraries listed below

• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆26Updated this week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• novoalab / SeqTagger
  Super-fast and accurate demultiplexing of direct RNA-seq runs.
  ☆18Updated 6 months ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆18Updated 5 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• comprna / riser
  Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
  ☆15Updated 5 months ago
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆37Updated last week
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆35Updated 3 months ago
• skovaka / uncalled4
  ☆83Updated last year
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆48Updated 5 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆38Updated 2 weeks ago
• LooseLab / bulkvis
  ☆49Updated last year
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
  ☆34Updated 2 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆44Updated 6 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• WGLab / NanoMod
  NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
  ☆38Updated 4 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated 2 months ago
• Psy-Fer / interARTIC
  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
  ☆31Updated 2 years ago
• benoukraflab / NanoVar
  Structural variant caller for low-depth long-read sequencing data
  ☆29Updated last year
• WGLab / LongReadSum
  ☆27Updated 4 months ago
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆51Updated 2 months ago
• tseemann / samclip
  Filter SAM file for soft and hard clipped alignments
  ☆53Updated last month
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• epi2me-labs / modbam2bed
  ☆52Updated 4 months ago
• bpucker / MGSE
  Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…
  ☆37Updated 6 months ago