Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data
☆18Aug 13, 2014Updated 12 years ago
Alternatives and similar repositories for PacBioEDA
Users that are interested in PacBioEDA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- assorted scripts for doing genomics☆13Nov 23, 2015Updated 10 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 8 years ago
- User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix☆10Apr 16, 2014Updated 12 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioSQL web☆14Jun 22, 2009Updated 17 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated 5 months ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated 6 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- Fast and accurate set similarity estimation via containment min hash☆41Jul 19, 2024Updated 2 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 11 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Bax File Decoder and Data Compressor☆33Jan 3, 2024Updated 2 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 9 years ago
- libmaus☆12Apr 16, 2015Updated 11 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Dec 20, 2018Updated 7 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 12 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 9 months ago
- ☆17May 22, 2023Updated 3 years ago
- DNA/RNA pattern matching algorithm☆21Aug 9, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Metagenomic profiling and phylogenetic distances via common kmers☆41Jul 12, 2021Updated 5 years ago
- OIDC::Lite - Perl Library of OpenID Connect☆10May 19, 2025Updated last year
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 11 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago