Realtime base modification frequency tool
☆13Sep 16, 2025Updated 6 months ago
Alternatives and similar repositories for realfreq
Users that are interested in realfreq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 4 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Feb 13, 2026Updated last month
- ☆12Nov 18, 2024Updated last year
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆42Updated this week
- A package to run real time analysis of nanopore methylation data.☆21Jan 27, 2026Updated last month
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 2 weeks ago
- ☆10Oct 18, 2021Updated 4 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- R package to predict microbial loads☆17Updated this week
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- Basecalling configuration prediction through FASTQ files☆33Updated this week
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 5 months ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 6 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Sturgeon is a CNS neural network classifier☆46Jan 22, 2026Updated 2 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- ☆31Jul 28, 2025Updated 7 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated last week
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆38Jan 28, 2026Updated last month
- A simple toolkit for manipulating nanopore signal data☆19Mar 14, 2026Updated last week
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 3 months ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- a tool for simulating nanopore raw signal data☆75Mar 4, 2026Updated 2 weeks ago
- ☆12Oct 13, 2021Updated 4 years ago
- Archived - new repo in README☆10Dec 12, 2024Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago