Remove lambda phage reads from a fastq file
☆29Jan 16, 2023Updated 3 years ago
Alternatives and similar repositories for nanolyse
Users that are interested in nanolyse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆40Apr 28, 2026Updated last month
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 7 months ago
- a short-read polishing tool for long-read assemblies☆217Sep 19, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- Filtering and trimming of long read sequencing data☆217Jan 16, 2023Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- Error correction scheme for storing information on DNA☆12Jul 27, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- A repository for collecting GPU basecalling stats☆91May 11, 2026Updated last month
- Plotting scripts for long read sequencing data☆554May 29, 2026Updated 2 weeks ago
- Extremely fast and accurate Nanopore demultiplexing☆94Jun 8, 2026Updated last week
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆86Mar 2, 2026Updated 3 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Analysis components from Oxford Nanopore Research☆98Apr 9, 2026Updated 2 months ago
- An overview of all nanopack tools☆291Jun 2, 2023Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆62Nov 21, 2024Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- A software for calculating telomere length☆76Oct 24, 2018Updated 7 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 3 months ago
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 6 months ago
- ☆12May 6, 2021Updated 5 years ago
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆55Mar 4, 2026Updated 3 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Jun 4, 2026Updated last week
- ☆37Dec 6, 2023Updated 2 years ago