wdecoster / nanolyseLinks
Remove lambda phage reads from a fastq file
☆29Updated 2 years ago
Alternatives and similar repositories for nanolyse
Users that are interested in nanolyse are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- CRyPTIC data processing pipelines☆34Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- Gene-flank analysis tool☆34Updated 11 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆53Updated 4 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆50Updated 2 weeks ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago