Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
☆18May 11, 2023Updated 2 years ago
Alternatives and similar repositories for primary-met-wgs-comparison
Users that are interested in primary-met-wgs-comparison are comparing it to the libraries listed below
Sorting:
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- ☆14Mar 28, 2025Updated 11 months ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆16Jan 21, 2026Updated last month
- ☆12Nov 21, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆34Jun 1, 2022Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Feb 27, 2026Updated last week
- ☆31Mar 5, 2024Updated 2 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- ☆42Jan 26, 2026Updated last month
- Clinical data for the TCGA PanCancer Atlas☆17Jul 12, 2019Updated 6 years ago
- Clinical sequencing-based primary site classifier☆38Feb 27, 2026Updated last week
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 7 months ago
- ☆23Nov 28, 2025Updated 3 months ago
- A robust model for quantitative comparison of ChIP-Seq data sets.☆23May 18, 2020Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated 7 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- DriverPower☆26Jan 18, 2025Updated last year
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆38Dec 23, 2025Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128May 29, 2025Updated 9 months ago
- ☆33Feb 26, 2025Updated last year
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆36Dec 3, 2024Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Nov 3, 2022Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year