UMCUGenetics / primary-met-wgs-comparisonLinks
Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
☆18Updated 2 years ago
Alternatives and similar repositories for primary-met-wgs-comparison
Users that are interested in primary-met-wgs-comparison are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- ☆15Updated 9 months ago
- ☆26Updated 2 years ago
- ☆48Updated 11 months ago
- ☆39Updated 3 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Analysis pipeline for CUT&TAG data☆20Updated 5 years ago
- ☆32Updated 4 years ago
- ☆18Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- ☆14Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- An R package to visualize bigwigs.☆32Updated 3 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last week
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆17Updated 2 years ago
- ☆20Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆32Updated 11 months ago
- ☆25Updated 2 months ago