Alternatives and similar repositories for primary-met-wgs-comparison

Users that are interested in primary-met-wgs-comparison are comparing it to the libraries listed below

• hartwigmedical / platinum

  View on GitHub
  Run multiple Pipeline5 instances at once
  ☆11Jun 6, 2025Updated 8 months ago
• seqyuan / trackc

  View on GitHub
  trackc aims to produce beautiful genome tracks that are highly customizable
  ☆16Jan 21, 2026Updated 3 weeks ago
• Personalis-DASH / DASH

  View on GitHub
  ☆12Nov 21, 2023Updated 2 years ago
• ChongJenniferZhang / CLCA_WGS

  View on GitHub
  ☆28Sep 20, 2023Updated 2 years ago
• SBIlab / NetBio

  View on GitHub
  ☆34Jun 1, 2022Updated 3 years ago
• SigProfilerSuite / SigProfilerTopography

  View on GitHub
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆24Jan 3, 2026Updated last month
• heinc1010 / BAMixChecker

  View on GitHub
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆15Jun 12, 2022Updated 3 years ago
• cancer-genomics / reproduce_lucas_wflow

  View on GitHub
  ☆31Mar 5, 2024Updated last year
• ZhouQiangwei / MethHaplo

  View on GitHub
  allele specific DNA methylation haplotype region
  ☆13Oct 18, 2023Updated 2 years ago
• GerkeLab / TCGAclinical

  View on GitHub
  Clinical data for the TCGA PanCancer Atlas
  ☆17Jul 12, 2019Updated 6 years ago
• itmoon7 / onconpc

  View on GitHub
  Clinical sequencing-based primary site classifier
  ☆38Jul 12, 2024Updated last year
• polyactis / Accucopy

  View on GitHub
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆17Mar 6, 2024Updated last year
• mskilab-org / dryclean

  View on GitHub
  Irons out wrinkles in noisy coverage data using robust PCA
  ☆15May 14, 2025Updated 9 months ago
• ShixiangWang / DoAbsolute

  View on GitHub
  Automate Absolute Copy Number Calling using 'ABSOLUTE' package
  ☆41Nov 28, 2023Updated 2 years ago
• abelson-lab / scATOMIC

  View on GitHub
  Pan-Cancer Single Cell Classifier
  ☆83May 30, 2024Updated last year
• treangenlab / methphaser

  View on GitHub
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆54Mar 5, 2025Updated 11 months ago
• sartorlab / methylSig

  View on GitHub
  R package for DNA methylation analysis
  ☆20Aug 18, 2024Updated last year
• markowetzlab / CINSignatureQuantification

  View on GitHub
  Quantifying copy number signatures from absolute copy number profiles
  ☆26Jul 23, 2025Updated 6 months ago
• hartwigmedical / pipeline5

  View on GitHub
  ☆23Nov 28, 2025Updated 2 months ago
• shao-lab / MAnorm

  View on GitHub
  A robust model for quantitative comparison of ChIP-Seq data sets.
  ☆23May 18, 2020Updated 5 years ago
• maxwellsh / DIGDriver

  View on GitHub
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Jul 30, 2022Updated 3 years ago
• HenrikBengtsson / TopDom

  View on GitHub
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21May 11, 2023Updated 2 years ago
• ShixiangWang / ezcox

  View on GitHub
  Easily Process a Batch of Cox Models
  ☆23Jul 26, 2025Updated 6 months ago
• baozg / Potato_C88

  View on GitHub
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆28Aug 14, 2024Updated last year
• STOmics / StereoMMv1

  View on GitHub
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆38Dec 23, 2025Updated last month
• smshuai / DriverPower

  View on GitHub
  DriverPower
  ☆26Jan 18, 2025Updated last year
• parklab / SigMA

  View on GitHub
  Mutational signature analysis for low statistics SNV data
  ☆64Aug 7, 2024Updated last year
• Teichlab / Genes2Genes

  View on GitHub
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Aug 10, 2025Updated 6 months ago
• xihaoli / STAARpipeline-Tutorial

  View on GitHub
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆35Dec 3, 2024Updated last year
• azizilab / starfysh

  View on GitHub
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128May 29, 2025Updated 8 months ago
• naumanjaved / fingerprint_maps

  View on GitHub
  Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…
  ☆28Jan 4, 2024Updated 2 years ago
• tushiqi / MAnorm2

  View on GitHub
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Nov 3, 2022Updated 3 years ago
• stjude / ChIPseqSpikeInFree

  View on GitHub
  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
  ☆41Feb 22, 2022Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated

  View on GitHub
  ☆32Feb 26, 2025Updated 11 months ago
• xlucpu / MOVICS

  View on GitHub
  Multi-Omics integration and VIsualization in Cancer Subtyping
  ☆146Jul 19, 2021Updated 4 years ago
• getzlab / MutSig2CV

  View on GitHub
  MutSig2CV from Lawrence et al. 2014
  ☆33Aug 18, 2020Updated 5 years ago
• SmritiChawla / Precily

  View on GitHub
  ☆35Aug 26, 2022Updated 3 years ago
• ay-lab / FitHiChIP

  View on GitHub
  Statistically Significant loops from HiChIP data
  ☆46Apr 17, 2024Updated last year
• YosefLab / popV

  View on GitHub
  ☆89Feb 9, 2026Updated last week