Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
☆17May 11, 2023Updated 3 years ago
Alternatives and similar repositories for primary-met-wgs-comparison
Users that are interested in primary-met-wgs-comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated last year
- Clinical data for the TCGA PanCancer Atlas☆22Jul 12, 2019Updated 7 years ago
- ☆14Mar 28, 2025Updated last year
- ☆13Nov 21, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- ☆34Jun 1, 2022Updated 4 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- Clinical sequencing-based primary site classifier☆39Feb 27, 2026Updated 6 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Jul 8, 2026Updated 2 months ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆16Sep 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- R package for DNA methylation analysis☆21Aug 18, 2024Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last week
- ☆33Mar 5, 2024Updated 2 years ago
- Code for the antibody deep learning paper.☆16Feb 28, 2022Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Crossmapped phenotype ontologies for the oncology domain☆16Updated this week
- ☆33Feb 26, 2025Updated last year
- ☆39Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 3 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆14Jul 18, 2025Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆17Dec 10, 2025Updated 8 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Aug 14, 2024Updated 2 years ago
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 6 months ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Mar 20, 2024Updated 2 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Aug 15, 2026Updated 3 weeks ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- Statistically Significant loops from HiChIP data☆48Apr 17, 2024Updated 2 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago