UMCUGenetics / primary-met-wgs-comparisonLinks
Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
☆17Updated 2 years ago
Alternatives and similar repositories for primary-met-wgs-comparison
Users that are interested in primary-met-wgs-comparison are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆25Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆49Updated last year
- An R package to time somatic mutations☆62Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆14Updated 5 months ago
- ☆47Updated 6 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆29Updated 9 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆23Updated last month
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆22Updated 3 years ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆37Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- Network construction Algorithm☆22Updated 11 months ago
- ☆14Updated 3 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- ☆17Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- ☆20Updated 4 years ago