Clinical data for the TCGA PanCancer Atlas
☆17Jul 12, 2019Updated 6 years ago
Alternatives and similar repositories for TCGAclinical
Users that are interested in TCGAclinical are comparing it to the libraries listed below
Sorting:
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18May 11, 2023Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 4 months ago
- Simple scVI implementation☆12Updated this week
- ☆11Jul 18, 2025Updated 8 months ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- ☆33Oct 4, 2020Updated 5 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- This Repo Contains Code to Finetune DETR on Custom Dataset☆14Oct 29, 2021Updated 4 years ago
- Code for Estimating Multi-cause Treatment Effects via Single-cause Perturbation (NeurIPS 2021)☆14Jan 5, 2022Updated 4 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".☆12Dec 9, 2020Updated 5 years ago
- Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs☆31Nov 22, 2025Updated 3 months ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- ☆21Apr 16, 2024Updated last year
- Package for heterogeneous causal effects in the presence of imperfect compliance (e.g., instrumental variables, fuzzy regression disconti…☆18Mar 6, 2024Updated 2 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated last year
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated last year
- Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformer…☆16Jan 13, 2026Updated 2 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆30Dec 31, 2020Updated 5 years ago
- Get dependencies for a project on GitHub.☆16Jun 17, 2021Updated 4 years ago
- Spatial transcriptomics analyses and decoding in R☆24Oct 23, 2025Updated 4 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- ☆47Aug 16, 2019Updated 6 years ago
- Methods for label-free mass spectrometry proteomics☆15Mar 23, 2025Updated 11 months ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- ☆39Feb 27, 2026Updated 3 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆47Oct 13, 2025Updated 5 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- ☆19Feb 19, 2026Updated last month
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Jan 24, 2022Updated 4 years ago