xihaoli / STAARpipeline-TutorialLinks
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
☆30Updated 8 months ago
Alternatives and similar repositories for STAARpipeline-Tutorial
Users that are interested in STAARpipeline-Tutorial are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆40Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆66Updated 4 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆21Updated last week
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A tool to plot significant regions of GWAS☆30Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- QDNAseq package for Bioconductor☆50Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 8 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- ☆23Updated 7 months ago
- ☆23Updated last year
- ☆38Updated 4 years ago
- ☆36Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- ☆13Updated 7 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆36Updated 5 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago