xihaoli / STAARpipeline-Tutorial
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
☆26Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for STAARpipeline-Tutorial
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated 3 months ago
- ☆20Updated 7 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- A tool to plot significant regions of GWAS☆28Updated last year
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Burden testing against public controls☆50Updated 8 months ago
- Structural variant merging tool☆44Updated 2 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 7 years ago
- An accurate and efficient HLA imputation method.☆26Updated last year
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆36Updated last month
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆48Updated 10 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆61Updated 2 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated last week
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 3 months ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆40Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- ☆24Updated 2 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆28Updated 4 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆24Updated 5 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- Cross-population fine-mapping☆26Updated last week
- ☆20Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- ☆21Updated this week