Alternatives and similar repositories for STAARpipeline-Tutorial

Users that are interested in STAARpipeline-Tutorial are comparing it to the libraries listed below

• ArkingLab / MitoHPC
  ☆23Updated last year
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆51Updated last month
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 10 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆51Updated 2 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆67Updated 7 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 7 months ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆28Updated 6 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 4 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆70Updated 2 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆32Updated 4 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last month
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• wwylab / MuSE
  Somatic point mutation caller
  ☆32Updated 6 months ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆26Updated 8 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆33Updated 2 years ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆52Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 11 months ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆28Updated last year