ShixiangWang / DoAbsoluteLinks
Automate Absolute Copy Number Calling using 'ABSOLUTE' package
☆41Updated 2 years ago
Alternatives and similar repositories for DoAbsolute
Users that are interested in DoAbsolute are comparing it to the libraries listed below
Sorting:
- An R package to time somatic mutations☆65Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Tutorial Website☆61Updated 4 years ago
- ☆82Updated 8 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- ☆13Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Updated last week
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆59Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- ☆38Updated 5 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆17Updated 6 years ago
- RNA editing tests☆17Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Fork of the Polysolver project☆33Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆31Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago