ShixiangWang / DoAbsolute
Automate Absolute Copy Number Calling using 'ABSOLUTE' package
☆39Updated last year
Alternatives and similar repositories for DoAbsolute:
Users that are interested in DoAbsolute are comparing it to the libraries listed below
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆56Updated 2 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 8 months ago
- An R package to time somatic mutations☆60Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆49Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Battenberg R package for subclonal copynumber estimation☆84Updated this week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- RNA editing tests☆16Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated 2 weeks ago
- A tool for the calculation of RNA-editing index for RNA seq data☆40Updated 11 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- SNV calling from single cell sequencing☆93Updated 3 months ago
- ☆13Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 8 months ago
- Tutorial Website☆56Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 7 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated this week
- Rocking R at UMCCR☆9Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 3 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- The "copynumber" R package with support for hg38☆19Updated last year
- ☆32Updated 7 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 9 months ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago