ShixiangWang / DoAbsolute
Automate Absolute Copy Number Calling using 'ABSOLUTE' package
☆40Updated last year
Alternatives and similar repositories for DoAbsolute:
Users that are interested in DoAbsolute are comparing it to the libraries listed below
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆46Updated 8 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 9 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 10 months ago
- ☆38Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- Full-length transcriptome splicing and mutation analysis☆81Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆47Updated 3 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated this week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆63Updated 5 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆41Updated last year
- Tutorial Website☆57Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆64Updated last week
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- SNV calling from single cell sequencing☆96Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 3 weeks ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Pipeline for Cut&Tag analysis☆19Updated 3 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago