markowetzlab / CINSignatureQuantification
Quantifying copy number signatures from absolute copy number profiles
☆24Updated last week
Alternatives and similar repositories for CINSignatureQuantification:
Users that are interested in CINSignatureQuantification are comparing it to the libraries listed below
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆13Updated 7 years ago
- Utility functions for FACETS☆34Updated last year
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆40Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆14Updated 9 years ago
- DriverPower☆26Updated 2 months ago
- ☆14Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated 8 months ago
- R package wrapping bedtools☆38Updated last week
- RNA editing tests☆17Updated 4 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆34Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆33Updated 2 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆28Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week