Alternatives and similar repositories for StereoMMv1

Users that are interested in StereoMMv1 are comparing it to the libraries listed below

• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• TencentAILabHealthcare / spatialID
  ☆40Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• QuKunLab / SPACEL
  ☆59Updated last year
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆31Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆31Updated last month
• STOmics / StereoSiTE
  Spatial transcriptome analysis in python
  ☆24Updated 7 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆68Updated 7 months ago
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆32Updated 2 years ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated 2 weeks ago
• MarcElosua / SPOTlight_deconvolution_analysis
  ☆19Updated 3 years ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆54Updated this week
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆21Updated 3 years ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆44Updated 6 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆54Updated this week
• xiaoyeye / TFvelo
  ☆45Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆63Updated last year
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆18Updated 3 months ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆65Updated last year
• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆12Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 5 months ago
• snehamitra / SCARlink
  ☆57Updated 2 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆17Updated last year
• Durenlab / LINGER
  ☆113Updated 3 months ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆47Updated last year
• navinlabcode / CellTrek
  ☆125Updated 3 years ago