Alternatives and similar repositories for StereoMMv1

Users that are interested in StereoMMv1 are comparing it to the libraries listed below

• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 4 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• madilabcode / scNET
  ☆46Updated 2 weeks ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• lanagarmire / Asgard
  ☆43Updated last year
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆25Updated 2 years ago
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆30Updated 2 years ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆62Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated last month
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆24Updated 3 weeks ago
• WanluLiuLab / scAtlasVAE
  ☆36Updated 3 weeks ago
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆20Updated 3 years ago
• Durenlab / LINGER
  ☆108Updated last month
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆18Updated 2 months ago
• Banovich-Lab / Spatial_PF
  ☆28Updated 4 months ago
• Roy-lab / scMTNI
  ☆27Updated last week
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆48Updated 2 weeks ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last week
• Patchouli-M / SequencingCancerFinder
  ☆35Updated last month
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆46Updated last year
• snehamitra / SCARlink
  ☆54Updated 3 weeks ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• QuKunLab / SPACEL
  ☆59Updated 11 months ago
• SydneyBioX / scJoint
  ☆59Updated 2 years ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• TencentAILabHealthcare / spatialID
  ☆39Updated 2 years ago