getzlab / MutSig2CVLinks
MutSig2CV from Lawrence et al. 2014
☆31Updated 5 years ago
Alternatives and similar repositories for MutSig2CV
Users that are interested in MutSig2CV are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆38Updated 5 years ago
- ☆44Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- ☆30Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- GLASS consortium☆40Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- ☆13Updated 7 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆39Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆41Updated 9 months ago
- RNA editing tests☆17Updated 4 years ago