getzlab / MutSig2CV
MutSig2CV from Lawrence et al. 2014
☆31Updated 4 years ago
Alternatives and similar repositories for MutSig2CV:
Users that are interested in MutSig2CV are comparing it to the libraries listed below
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- ☆38Updated 5 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆13Updated 7 years ago
- ☆14Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- RNA editing tests☆17Updated 4 years ago
- ☆28Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Micro DNA identification☆22Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago