Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.
☆28Jan 4, 2024Updated 2 years ago
Alternatives and similar repositories for fingerprint_maps
Users that are interested in fingerprint_maps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 11 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clinical interpretation of somatic mutations in cancer☆52Feb 20, 2025Updated last year
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆313Apr 24, 2026Updated 2 weeks ago
- Software program for checking sample matching for NGS data☆140Jun 20, 2024Updated last year
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Jun 23, 2025Updated 10 months ago
- Software for FLT3-ITD detection and MRD monitoring assay☆14Jul 22, 2022Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Documentation and description of AWS iGenomes S3 resource.☆121Dec 8, 2024Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20Jul 28, 2025Updated 9 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 4 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- DRAGEN open-source mapper☆187Sep 8, 2023Updated 2 years ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆174Apr 30, 2026Updated last week
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- ☆82Nov 30, 2018Updated 7 years ago
- ☆26Apr 28, 2026Updated last week
- sort genomic data☆36Nov 7, 2025Updated 6 months ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Apr 15, 2026Updated 3 weeks ago