MAnorm2 for Normalizing and Comparing ChIP-seq Samples
☆33Nov 3, 2022Updated 4 years ago
Alternatives and similar repositories for MAnorm2
Users that are interested in MAnorm2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Dec 19, 2022Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆44Aug 27, 2026Updated 2 months ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 11 months ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated last year
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- A robust model for quantitative comparison of ChIP-Seq data sets.☆23May 18, 2020Updated 6 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆30Aug 13, 2021Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆73Nov 14, 2025Updated 11 months ago
- ☆12Aug 28, 2020Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 7 months ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Sep 15, 2026Updated last month
- FastPCA using PRIMME☆10Dec 16, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆17Feb 17, 2021Updated 5 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Nov 3, 2025Updated last year
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- ☆33Jun 23, 2026Updated 4 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- ☆102Jun 16, 2026Updated 4 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated last year
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆210Feb 27, 2026Updated 8 months ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- Statistically Significant loops from HiChIP data☆50Apr 17, 2024Updated 2 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆26Jun 30, 2021Updated 5 years ago
- Package for including repetitive regions in peak calling from ChIP-seq datasets☆11Nov 6, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Oct 29, 2025Updated last year
- http://research-pub.gene.com/IMvigor210CoreBiologies/☆12Jun 10, 2024Updated 2 years ago
- ☆11May 19, 2020Updated 6 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆259Aug 3, 2026Updated 3 months ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago