MAnorm2 for Normalizing and Comparing ChIP-seq Samples
☆33Nov 3, 2022Updated 3 years ago
Alternatives and similar repositories for MAnorm2
Users that are interested in MAnorm2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A robust model for quantitative comparison of ChIP-Seq data sets.☆22May 18, 2020Updated 6 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Dec 16, 2022Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated 10 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆82Jan 24, 2025Updated last year
- ☆16Oct 29, 2025Updated 6 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆68Nov 14, 2025Updated 6 months ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆207Feb 27, 2026Updated 2 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10May 1, 2026Updated 3 weeks ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- ☆44Oct 27, 2018Updated 7 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- step by step tutorial in the website☆34Feb 22, 2025Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Mar 3, 2026Updated 2 months ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Jan 25, 2023Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 4 months ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆52Dec 10, 2025Updated 5 months ago
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆247Mar 23, 2026Updated 2 months ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago