A robust model for quantitative comparison of ChIP-Seq data sets.
☆23May 18, 2020Updated 6 years ago
Alternatives and similar repositories for MAnorm
Users that are interested in MAnorm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A motif discovery tool to detect the occurrences of known motifs☆20Jan 21, 2021Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆44Aug 27, 2026Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 9 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- Tutorial for generating and evaluating latent-space representations of vocalizations using UMAP☆15May 1, 2022Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆55Jun 17, 2025Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated last week
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 11 months ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Python CLI to convert between zero and one based genomic coordinate systems☆24Jul 27, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 3 years ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- Simple tools for analyze memory usage of Linux processes☆18Nov 7, 2021Updated 4 years ago
- an organelle emulator written in pygame + puredata☆14Aug 31, 2021Updated 5 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- A MatLab framework to facilitate the analysis of bipartite complex networks☆10Jul 12, 2015Updated 11 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆49May 22, 2024Updated 2 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago