A robust model for quantitative comparison of ChIP-Seq data sets.
☆22May 18, 2020Updated 5 years ago
Alternatives and similar repositories for MAnorm
Users that are interested in MAnorm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- Tutorial for generating and evaluating latent-space representations of vocalizations using UMAP☆15May 1, 2022Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆53Jun 17, 2025Updated 10 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34Aug 1, 2024Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆21Feb 16, 2026Updated 2 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 6 months ago
- Basics of the OSCA book☆15Sep 29, 2025Updated 7 months ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python CLI to convert between zero and one based genomic coordinate systems☆23Jul 27, 2018Updated 7 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- an organelle emulator written in pygame + puredata☆13Aug 31, 2021Updated 4 years ago
- Simple tools for analyze memory usage of Linux processes☆18Nov 7, 2021Updated 4 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- ChIP-seq analysis notes from Ming Tang☆851Aug 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated 8 months ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago