Alternatives and similar repositories for CLCA_WGS

Users that are interested in CLCA_WGS are comparing it to the libraries listed below

• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated 2 years ago
• McGranahanLab / ImmuneLENS
  ☆13Updated 3 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆15Updated 4 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 10 months ago
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆41Updated last year
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• gxiaolab / scAllele
  ☆34Updated last year
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆18Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 2 months ago
• wenweixiong / MARVEL
  ☆49Updated 10 months ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 5 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• cit-bioinfo / mMCP-counter
  Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
  ☆11Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆27Updated 7 months ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆13Updated last month