ChongJenniferZhang / CLCA_WGS
☆25Updated last year
Alternatives and similar repositories for CLCA_WGS:
Users that are interested in CLCA_WGS are comparing it to the libraries listed below
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- ☆13Updated 2 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- ☆49Updated 9 months ago
- ☆33Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- ☆27Updated 6 months ago
- Micro DNA identification☆23Updated 3 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆16Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- ☆11Updated last year
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- ☆17Updated 4 years ago
- ☆30Updated 3 months ago
- ☆16Updated 4 years ago
- ☆20Updated 4 years ago