ChongJenniferZhang / CLCA_WGS
☆23Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CLCA_WGS
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆11Updated last year
- ☆41Updated 3 months ago
- RNA editing tests☆16Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- ☆15Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆11Updated 3 years ago
- ☆30Updated 7 months ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- ☆20Updated last year
- ☆14Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Micro DNA identification☆22Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆27Updated last year
- ☆14Updated last year
- ☆10Updated 3 weeks ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated 2 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆18Updated last year
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆25Updated 2 years ago