arunsethuraman / biomi609spring2022Links
This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BIOMI 609 Computational Genomics and Bioinformatics offered at San Diego State University.
☆14Updated 3 years ago
Alternatives and similar repositories for biomi609spring2022
Users that are interested in biomi609spring2022 are comparing it to the libraries listed below
Sorting:
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 3 months ago
- Shiny apps for teaching Population Genetics☆66Updated 2 years ago
- Population genetic simulations in R☆61Updated 2 weeks ago
- microhaplotype visualizer and analyzer☆20Updated 4 years ago
- initial commit☆26Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 4 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- method for modeling continuous and discrete population genetic structure☆38Updated last year
- A framework for simulation-based inference in evolutionary biology☆26Updated last week
- ☆56Updated 3 years ago
- Suite of tools for pangenomics built using vg☆24Updated 4 months ago
- Population and Evolutionary Genetics Analysis System☆29Updated 9 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆29Updated 6 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆149Updated 2 years ago
- ☆31Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated last month
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- the hierfstat package☆25Updated last year
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated 3 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated 4 months ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated last month
- A primer for computational tools to analyze genetics of populations in R☆89Updated 4 years ago
- ☆44Updated 8 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 5 years ago
- Population Genomics in R workshop☆12Updated last year