genomicsITER / one-linersLinks
Frequently used commands in Bioinformatics
☆21Updated 7 months ago
Alternatives and similar repositories for one-liners
Users that are interested in one-liners are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- ☆23Updated 7 months ago
- All kinds of NGS analysis pipeline☆12Updated 5 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 9 months ago
- Course in population genomics at BiRC☆12Updated 3 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- tspex: tissue-specificity calculator☆32Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- lncRNA-screen☆25Updated 8 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Structural variant merging tool☆53Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- ☆36Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- ☆33Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- ☆19Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆22Updated 2 years ago