Alternatives and similar repositories for scTranslator:

Users that are interested in scTranslator are comparing it to the libraries listed below

• SmritiChawla / Precily
  ☆30Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 5 years ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆110Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆67Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆65Updated 3 weeks ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆69Updated 2 months ago
• theislab / scTab
  ☆57Updated 7 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 6 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆93Updated last month
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• SchubertLab / mvTCR
  ☆51Updated 5 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆58Updated last week
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆41Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆76Updated 2 weeks ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆119Updated last month
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated last year
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆129Updated 2 years ago
• theislab / scgen-reproducibility
  ☆24Updated 4 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆64Updated last month
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆39Updated this week
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆115Updated 7 months ago
• QuKunLab / MultiomeBenchmarking
  ☆43Updated last month