Papatheodorou-Group / CATD_snakemakeLinks
Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets
☆15Updated last month
Alternatives and similar repositories for CATD_snakemake
Users that are interested in CATD_snakemake are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Cellsnake tool main repo☆34Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Single-cell RNA Processing Software☆11Updated 2 weeks ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- a tool for summarizing and integrating gene-set analysis results☆16Updated 9 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- ☆12Updated last year
- ☆23Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- workshop website on readthedocs☆19Updated last month
- ☆22Updated 11 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year