Benchmark gene representations from different model families
☆16May 29, 2025Updated last year
Alternatives and similar repositories for gene-benchmark
Users that are interested in gene-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build foundation model for RNA or DNA data☆62Jul 19, 2026Updated last week
- FuseMedML based molecular biochemistry library for drug discovery/repurposing☆25Mar 17, 2026Updated 4 months ago
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 2 months ago
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆19Dec 29, 2025Updated 6 months ago
- Repository for Worldwide Non-pharmaceutical Interventions Tracker for COVID19 (WNTRAC) dataset open sourced by IBM☆18Mar 29, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆19Jul 7, 2026Updated 2 weeks ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- Benchmarking gene embeddings on single, paired, and gene set tasks☆21Nov 29, 2025Updated 7 months ago
- GENOT: Generative Neural Optimal Transport☆17Dec 18, 2024Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- ☆19Jun 12, 2026Updated last month
- ☆17Jan 30, 2026Updated 5 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆16Mar 3, 2026Updated 4 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆19Oct 10, 2024Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Tensorflow: Generalizing Across Domains via Cross-Gradient Training☆15May 11, 2018Updated 8 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 5 months ago
- ☆15Jul 24, 2024Updated 2 years ago
- Wrapper for Mikhail Belkin et. al's Pointcloud LB operator. Not dependent on PCL☆11Apr 11, 2014Updated 12 years ago
- Curated roadmap for quant finance interviews (Quant Trader, Quant Researcher, Quant Analyst): probability, mental math, brainteasers, cod…☆24Apr 15, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Apr 30, 2025Updated last year
- Fully sync two secure-scuttlebutt databases over a duplex stream.☆15Jun 13, 2018Updated 8 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆63Jan 12, 2026Updated 6 months ago
- Infrastructure setup.☆10Jul 27, 2019Updated 6 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 3 weeks ago
- Multigrate: multiomic data integration for single-cell genomics☆34Updated this week
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated last year
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Mar 22, 2022Updated 4 years ago
- Transformer Based Embeddings of Wasserstein Distance☆26Feb 18, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆99Aug 12, 2024Updated last year
- Stream Data from Databricks Directly to PowerBI, and CosmosDB!☆12Sep 25, 2018Updated 7 years ago
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆13Jun 10, 2025Updated last year
- Tissue reassembly with generative AI☆32Jul 5, 2026Updated 3 weeks ago
- ☆15Feb 12, 2026Updated 5 months ago
- Object Relational Mapper for structured data encoded with Google's Protocol Buffers☆11Jul 18, 2017Updated 9 years ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 5 months ago