Benchmark gene representations from different model families
☆16May 29, 2025Updated last year
Alternatives and similar repositories for gene-benchmark
Users that are interested in gene-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FuseMedML based molecular biochemistry library for drug discovery/repurposing☆26Mar 17, 2026Updated 7 months ago
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 5 months ago
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆20Dec 29, 2025Updated 10 months ago
- Repository for Worldwide Non-pharmaceutical Interventions Tracker for COVID19 (WNTRAC) dataset open sourced by IBM☆18Mar 29, 2022Updated 4 years ago
- tRNA Analysis of eXpression☆15Feb 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Benchmarking gene embeddings on single, paired, and gene set tasks☆23Nov 29, 2025Updated 11 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Fairness in single-cell data☆22Mar 25, 2026Updated 7 months ago
- We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple …☆136Sep 16, 2026Updated last month
- ☆18Jan 30, 2026Updated 9 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 8 months ago
- GENOT: Generative Neural Optimal Transport☆19Dec 18, 2024Updated last year
- ☆24Aug 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆22Jun 12, 2026Updated 4 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆23Oct 10, 2024Updated 2 years ago
- ☆15Jul 24, 2024Updated 2 years ago
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 8 months ago
- this is the script used to compare single-cell perturbation response prediction models.☆10Jun 12, 2026Updated 4 months ago
- stFormer generates contextual gene representations within single cell and spatial niche.☆11Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Wrapper for Mikhail Belkin et. al's Pointcloud LB operator. Not dependent on PCL☆11Apr 11, 2014Updated 12 years ago
- ☆24Apr 30, 2025Updated last year
- Infrastructure setup.☆10Jul 27, 2019Updated 7 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆28Jul 3, 2026Updated 4 months ago
- Tensorflow: Generalizing Across Domains via Cross-Gradient Training☆15May 11, 2018Updated 8 years ago
- This repository contains the implementation of my M.Sc. work "Partial Correspondence of 3D Shapes using Properties of the Nearest-Neighbo…☆10May 30, 2019Updated 7 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆69Sep 30, 2026Updated last month
- Multigrate: multiomic data integration for single-cell genomics☆35Oct 26, 2026Updated last week
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Mar 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transformer Based Embeddings of Wasserstein Distance☆28Feb 18, 2026Updated 8 months ago
- Docker configuration to develop and deploy a Plotly Dash application☆10May 11, 2020Updated 6 years ago
- Tissue reassembly with generative AI☆32Jul 5, 2026Updated 3 months ago
- Azure Machine Learning Workshop using MLOPS☆11Apr 7, 2021Updated 5 years ago
- ☆18Feb 12, 2026Updated 8 months ago
- A Robust Local Spectral Descriptor for Matching Non-Rigid Shapes with Incompatible Shape Structures (CVPR 2019)☆13May 25, 2020Updated 6 years ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆52Jan 30, 2026Updated 9 months ago