Alternatives and similar repositories for monae

Users that are interested in monae are comparing it to the libraries listed below

• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• BioX-NKU / scButterfly
  A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
  ☆25Updated last year
• UCSC-VLAA / EpiFoundation
  Pytorch implementation of EpiFoundation
  ☆24Updated 10 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• HelloWorldLTY / UKBioLM
  ☆22Updated 8 months ago
• theislab / CFGen
  ☆25Updated 4 months ago
• QuKunLab / MultiomeBenchmarking
  ☆51Updated 10 months ago
• ttgump / spaVAE
  Dependency-aware deep generative models for multitasking analysis of spatial genomics data
  ☆40Updated last year
• jsxlei / scCLIP
  ☆32Updated last year
• liu-bioinfo-lab / EPCOT
  ☆25Updated 2 years ago
• mcgilldinglab / scCross
  A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…
  ☆15Updated 5 months ago
• zhyu-lab / bmvae
  a variational autoencoder method for clustering single-cell mutation data
  ☆12Updated last year
• kaitlin309 / PRIESSTESS
  ☆12Updated 4 months ago
• suinleelab / contrastiveVI
  ☆60Updated last year
• microsoft / zero-shot-scfoundation
  ☆76Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• lcrawlab / recall
  Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing
  ☆16Updated last month
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• visze / sequence_cnn_models
  ☆13Updated 11 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆58Updated last year
• yuzhenmao / ScRAT
  Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).
  ☆13Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆34Updated 2 years ago
• FakeEnd / iDNA_ABF
  python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…
  ☆15Updated last year
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated 2 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆35Updated last month
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• Philyzh8 / scMGCA
  "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…
  ☆16Updated 2 years ago
• TencentAILabHealthcare / scTranslator
  ☆74Updated 4 months ago
• mhorlacher / rbpnet
  ☆18Updated last year
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆58Updated last year