☆92Aug 12, 2024Updated last year
Alternatives and similar repositories for biolord
Users that are interested in biolord are comparing it to the libraries listed below
Sorting:
- ☆60Apr 5, 2024Updated last year
- Single-cell perturbation analysis☆289Feb 23, 2026Updated last week
- Conditional out-of-distribution prediction☆62Aug 2, 2024Updated last year
- ☆56Nov 1, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆337Feb 1, 2025Updated last year
- ☆66Jul 21, 2023Updated 2 years ago
- Consensus peaks of chromatin accessibility in the human genome☆16Dec 1, 2025Updated 3 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Nov 12, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- ☆25Oct 14, 2024Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆66Feb 11, 2026Updated 3 weeks ago
- ☆32Feb 22, 2026Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆120Sep 27, 2024Updated last year
- Convert between AnnData and SingleCellExperiment☆144Updated this week
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- ☆17Updated this week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- This is the alpha version of the CellOracle package☆422Feb 3, 2026Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- trajectory inference☆107Jan 27, 2025Updated last year
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated 8 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 2 weeks ago
- Vector representations of gene co-expression in single cell RNAseq.☆36Nov 8, 2025Updated 3 months ago
- Simple scVI implementation☆12Feb 23, 2026Updated last week
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Learning cell communication from spatial graphs of cells☆113Jan 15, 2024Updated 2 years ago