Materials and scripts for building cell type encyclopedia table
☆20Mar 16, 2026Updated 6 months ago
Alternatives and similar repositories for celltypist_wiki
Users that are interested in celltypist_wiki are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 7 months ago
- ☆17Jul 29, 2021Updated 5 years ago
- A tool for semi-automatic cell type classification☆512May 22, 2026Updated 4 months ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆12Jan 9, 2025Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆15Updated this week
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆15Oct 27, 2023Updated 2 years ago
- codes for article☆18Jan 14, 2026Updated 9 months ago
- ☆33Feb 26, 2025Updated last year
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CZ CELLxGENE Discover Census☆128Aug 4, 2026Updated 2 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆17Sep 16, 2024Updated 2 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 2 months ago
- ☆12May 4, 2022Updated 4 years ago
- Comprehensive survival analyses on the TCGA data.☆17Jun 10, 2022Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆94Jan 19, 2025Updated last year
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 8 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆17Nov 8, 2024Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆47Apr 8, 2020Updated 6 years ago
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 3 years ago
- A script for collecting the PubMed Central dataset in a language modelling friendly format.☆26Feb 16, 2021Updated 5 years ago
- ☆20May 25, 2024Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The documentation for the Clustergrammer project☆10Oct 21, 2020Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆40Sep 20, 2022Updated 4 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- Tackle data analytics and machine learning challenges and build complex applications with R 3.5☆22Jan 30, 2023Updated 3 years ago
- Doublet detection in single-cell RNA-seq data.☆99Feb 6, 2025Updated last year
- ☆11Jan 20, 2022Updated 4 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 3 years ago