Materials and scripts for building cell type encyclopedia table
☆20Mar 16, 2026Updated 5 months ago
Alternatives and similar repositories for celltypist_wiki
Users that are interested in celltypist_wiki are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 5 months ago
- ☆17Jul 29, 2021Updated 5 years ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated 4 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆11Jan 9, 2025Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆15Aug 27, 2026Updated last week
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆15Oct 27, 2023Updated 2 years ago
- codes for article☆19Jan 14, 2026Updated 7 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- ☆33Feb 26, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CZ CELLxGENE Discover Census☆129Aug 4, 2026Updated 3 weeks ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆17Sep 16, 2024Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- Comprehensive survival analyses on the TCGA data.☆17Jun 10, 2022Updated 4 years ago
- ☆12May 4, 2022Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆94Jan 19, 2025Updated last year
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 7 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆17Nov 8, 2024Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆20Mar 7, 2024Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆47Apr 8, 2020Updated 6 years ago
- These are scripts for pan-cacner NK cells analyses.☆77Aug 18, 2023Updated 3 years ago
- A script for collecting the PubMed Central dataset in a language modelling friendly format.☆26Feb 16, 2021Updated 5 years ago
- ☆20May 25, 2024Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The documentation for the Clustergrammer project☆10Oct 21, 2020Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- Tackle data analytics and machine learning challenges and build complex applications with R 3.5☆22Jan 30, 2023Updated 3 years ago
- Doublet detection in single-cell RNA-seq data.☆99Feb 6, 2025Updated last year
- ☆11Jan 20, 2022Updated 4 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago