Teichlab / celltypist_wikiLinks
Materials and scripts for building cell type encyclopedia table
☆20Updated last month
Alternatives and similar repositories for celltypist_wiki
Users that are interested in celltypist_wiki are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- ☆60Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- ☆39Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- Inference of TCR motifs☆32Updated 5 months ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- Fast motif matching in R☆46Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆57Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 7 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆23Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆44Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- ☆15Updated 4 years ago
- ☆13Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- Supporting data files and code for the publication by Shilts et al.☆31Updated 3 years ago
- ACTIONet single-cell analysis framework☆43Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆54Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago