The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
☆46Apr 8, 2020Updated 5 years ago
Alternatives and similar repositories for aml2019
Users that are interested in aml2019 are comparing it to the libraries listed below
Sorting:
- Workflow to reproduce results and figures for the second BeatAML manuscript☆14Jun 28, 2022Updated 3 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- Materials and scripts for building cell type encyclopedia table☆20Dec 2, 2025Updated 3 months ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Some NGS workflow created by snakemake☆14Jan 15, 2025Updated last year
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Unofficial RStudio (IDE for R) WakaTime (https://wakatime.com) plugin.☆15Feb 3, 2023Updated 3 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- ☆18Feb 18, 2021Updated 5 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- ☆15Jun 11, 2019Updated 6 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Aug 10, 2022Updated 3 years ago
- Publication Page for MPAL Paper 2019☆83Jun 25, 2020Updated 5 years ago
- A Pipeline to Process RNAseq Data☆15Jun 15, 2022Updated 3 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆64Aug 27, 2025Updated 6 months ago
- Cluster high dimensional categorical datasets☆16Sep 11, 2023Updated 2 years ago
- Analysis notebooks and data for AML hierarchies paper☆18Jun 28, 2023Updated 2 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 2 years ago
- ☆39Aug 4, 2021Updated 4 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- ☆18Apr 17, 2025Updated 10 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Mar 4, 2017Updated 9 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 3 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Jan 22, 2026Updated last month
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 6 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago