BernsteinLab / aml2019
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
☆37Updated 4 years ago
Alternatives and similar repositories for aml2019:
Users that are interested in aml2019 are comparing it to the libraries listed below
- ☆53Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆61Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated 3 weeks ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- ☆16Updated 5 years ago
- ☆59Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆73Updated 3 years ago
- ☆60Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆40Updated this week
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆48Updated 4 years ago
- ☆47Updated 2 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- simpler single cell RNAseq data clustering☆40Updated 3 weeks ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago