The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
☆46Apr 8, 2020Updated 5 years ago
Alternatives and similar repositories for aml2019
Users that are interested in aml2019 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 2 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆15Jun 28, 2022Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- Some NGS workflow created by snakemake☆14Jan 15, 2025Updated last year
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Unofficial RStudio (IDE for R) WakaTime (https://wakatime.com) plugin.☆15Feb 3, 2023Updated 3 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Mar 4, 2017Updated 9 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated last week
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- ☆15Jun 11, 2019Updated 6 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- Publication Page for MPAL Paper 2019☆84Jun 25, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆66Aug 27, 2025Updated 6 months ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- Cluster high dimensional categorical datasets☆16Sep 11, 2023Updated 2 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Aug 10, 2022Updated 3 years ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 3 years ago
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- ☆22Apr 6, 2018Updated 7 years ago
- Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-1…☆12Feb 20, 2021Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14May 28, 2019Updated 6 years ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19May 28, 2020Updated 5 years ago
- Accurate and fast cell marker gene identification with COSG☆58Mar 7, 2026Updated 2 weeks ago
- ☆12Jun 9, 2016Updated 9 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year