BernsteinLab / aml2019Links
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
☆38Updated 5 years ago
Alternatives and similar repositories for aml2019
Users that are interested in aml2019 are comparing it to the libraries listed below
Sorting:
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- Mouse cell atlas☆60Updated 5 years ago
- ☆68Updated last year
- ☆62Updated 5 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆21Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆55Updated 4 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆31Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆63Updated 4 years ago
- ☆39Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- ☆47Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated 2 weeks ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆24Updated 6 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year