BernsteinLab / aml2019Links
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
☆41Updated 5 years ago
Alternatives and similar repositories for aml2019
Users that are interested in aml2019 are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- ☆55Updated 4 years ago
- ☆71Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- ☆63Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆96Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 7 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago