ernstlab / ConsHMMLinks
☆19Updated 8 months ago
Alternatives and similar repositories for ConsHMM
Users that are interested in ConsHMM are comparing it to the libraries listed below
Sorting:
- simplified cellranger for long-read data☆19Updated 5 months ago
- ☆34Updated 2 months ago
- ☆23Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- ☆39Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆12Updated 5 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- ☆22Updated 5 years ago
- ☆24Updated last year
- ☆13Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week