ernstlab / ConsHMMLinks
☆19Updated 7 months ago
Alternatives and similar repositories for ConsHMM
Users that are interested in ConsHMM are comparing it to the libraries listed below
Sorting:
- simplified cellranger for long-read data☆19Updated 4 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆39Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Genomic Association Tester☆35Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- ☆23Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- ☆34Updated 2 months ago
- chia pet analysis software☆25Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- ☆33Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago